Home
Found 55 results

2009
Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae., Bradley, P.H.; Brauer, M.J.; Troyanskaya, O.G.; Rabinowitz, J.D. , PLoS Computational Biology, 01/2009, Volume 5, Issue 1, (2009) Abstract
Predicting Cellular Growth from Gene Expression Signatures, Airoldi, E.M.; Huttenhower, C.; Gresham, D.; Lu, C.; Caudy, A.A.; Dunham, M.J.; Broach, J.R.; Botstein, D.; Troyanskaya, O.G. , PLoS Computational Biology, 01/2009, Volume 5, Issue 1, (2009) Abstract
Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis, Hess, D.C.; Myers, C.L.; Huttenhower, C.; Hibbs, M.A.; Hayes, A.P.; Paw, J.; Clore, J.J.; Mendoza, R.M.; Luis, B.S.; Nislow, C.; Giaever, G.; Costanzo, M.; Troyanskaya, O.G.; Caudy, A.A. , PLoS Genetics, (2009) Abstract
Detailing regulatory networks through large scale data integration, Huttenhower, C.; Mutungu, K.T.; Indik, N.; Yang, W.; Schroeder, M.; Forman, J.J.; Troyanskaya, O.G.; Coller, H.A. , Bioinformatics, (2009) Abstract
Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis, Hibbs, M.A.; Myers, C.L.; Huttenhower, C.; Hess, D.C.; Li, K.; Caudy, A.A.; Troyanskaya, O.G. , PLoS Computational Biology, (2009) Abstract
Exploring the human genome with functional maps, Huttenhower, C.; Haley, E.M.; Hibbs, M.A.; Dumeaux, V.; Barrett, D.R.; Coller, H.A.; Troyanskaya, O.G. , Genome Research, (2009) Abstract
Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans. , Chikina MD, H.C.; OG, T. , PLoS computational biology, Volume 5(6), Issue e1000417, (2009) Abstract
The impact of incomplete knowledge on protein function prediction, Huttenhower, C.; Hibbs, M.A.; Myers, C.L.; Caudy, A.A.; Hess, D.C.; Troyanskaya, O.G. , Bioinformatics, (2009) Abstract
2008
Aneuploidy Prediction and Tumor Classification with Heterogeneous Hidden Conditional Random Fields., Barutcuoglu, Z.; Airoldi, E.M.; Dumeaux, V.; Schapire, R.E.; Troyanskaya, O.G. , Bioinformatics, 12/2008, (2008) Abstract
Assessing the functional structure of genomic data, Huttenhower, C.; Troyanskaya, O.G. , Bioinformatics, (2008) Abstract
A genome-wide functional network for the laboratory mouse, Guan, Y.; Myers, C.L.; Lu, R.; Lemischka, I.R.; Bult, C.J.; Troyanskaya, O.G. , PLoS Computational Biology, (2008) Abstract
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence, Pena-Castillo, L.; Tasan, M.; Myers, C.L.; Lee, H.; Joshi, T.; Zhang, C.; Guan, Y.; ...,; Blake, J.; Deng, M.; Jordan, M.; Noble, W.; Morris, Q.; Klein-Seetharaman, J.; Bar-Joseph, Z.; Chen, T.; Sun, F.; Troyanskaya, O.G.; Marcotte, E.; Xu, D..; Hughes, T.; Roht, F. , Genome Biology, (2008) Abstract
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast., Brauer, M.J.; Huttenhower, C.; Airoldi, E.M.; Rosenstein, R.; Matese, J.C.; Gresham, D.; Boer, V.M.; Troyanskaya, O.G.; Botstein, D. , Molecular Biology of the Cell, (2008) Abstract
Predicting gene function in a hierarchical context with an ensemble of classifiers, Guan, Y.; Myers, C.L.; Hess, D.; Barutcuoglu, Z.; Caudy, A.; Troyanskaya, O.G. , Genome Biology, (2008) Abstract
The Sleipnir library for computational functional genomics, Huttenhower, C.; Schroeder, M.; Chikina, M.D.; Troyanskaya, O.G. , Bioinformatics, (2008) Abstract
2007
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry, Chi, A.; Huttenhower, C.; Geer, L.Y.; Coon, J.J.; Syka, J.E.P.; Bai, D.L.; Shabanowitz, J.; Burke, D.J.; Troyanskaya, O.G.; Hunt, D.F. , PNAS , (2007) Abstract
Context-sensitive data integration and prediction of biological networks, Myers, C.L.; Troyanskaya, O.G. , Bioinformatics, (2007) Abstract
Computational identification of cellular networks and pathways, Markowetz, F.; Troyanskaya, O.G. , Molecular Biosystems, (2007) Abstract
Exploring the functional landscape of gene expression: directed search of large microarray compendia, Hibbs, M.A.; Hess, D.C.; Myers, C.L.; Huttenhower, C.; Li, K.; Troyanskaya, O.G. , Bioinformatics, (2007) Abstract
Functional analysis of gene duplications in Saccharomyces cerevisiae, Guan, Y.; Dunham, M.J.; Troyanskaya, O.G. , Genetics, (2007) Abstract
Inferring cellular networks - a review, Markowetz, F.; Spang, R. , BMC Bioinformatics, (2007) Abstract
Nested Effects Models for High-Dimensional Phenotyping Screens, Markowetz, F.; Kostka, D.; Troyanskaya, O.G.; Spang, R. , ISMB/ECCB, (2007) Abstract
Nearest Neighbor Networks: Clustering Expression Data Based on Gene Neighborhoods, Huttenhower, C.; Flamholz, A.I.; Landis, J.N.; Sahi, S.; Myers, C.L.; Olszewski, K.L.; Hibbs, M.A.; Siemers, N.O.; Troyanskaya, O.G.; Coller, H.A. , BMC Bioinformatics, (2007) Abstract
Systems Support for Remote Visualization of Genomics Applications over Wide Area Networks, Bongo, L.A.; Wallace, G.; Lasren, T.; Li, K.; Troyanskaya, O.G. , Proceedings of the International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology, (2007) Abstract
Viewing the Larger Context of Genomic Data through Horizontal Integration, Hibbs, M.A.; Wallace, G.; Dunham, M.; Li, K.; Troyanskaya, O.G. , 11th Int. Conf. on Information Visualization (IV07), (2007) Abstract
2006
A scalable method for integration and functional analysis of multiple microarray datasets, Huttenhower, C.; Hibbs, M.; Myers, C.; Troyanskaya, O.G. , Bioinformatics , (2006) Abstract
Bayesian Data Integration: A Functional Perspective., Huttenhower, C.; Troyanskaya, O.G. , Computational Systems Bioinformatics conference (CSB), (2006) Abstract
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae, Reguly, T.; Breitkreutz, A.; Boucher, L.; Breitkreutz, B.; Hon, G.; Myers, C.L.; Parsons, A.; Friesen, H.; Oughtred, R.; Tong, A.; Stark, C.; Ho, Y.; Botstein, D.; Andrews, B.; Boone, C.; Troyanskya, O.G.; Ideker, T.; Dolinski, K.; Batada, N.N.; Tyer, M. , Journal of Biology, (2006) Abstract
Finding function: evaluation methods for functional genomic data, Myers, C.L.; Barrett, D.R.; Hibbs, M.A.; Huttenhower, C.; Troyanskaya, O.G. , BMC Genomics, (2006) Abstract
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool, Sealfon, R.S.; Hibbs, M.A.; Huttenhower, C.; Myers, C.L.; Troyanskaya, O.G. , BMC Bioinformatics, (2006) Abstract
Global analysis of gene function in yeast by quantitative phenotypic profiling, Brown, J.A.; Sherlock, G.; Myers, C.L.; Burrows, N.M.; Deng, C.; Wu, H.I.; McCann, K.E.; Troyanskaya, O.G.; Brown, J.M. , Molecular Systems Biology, (2006) Abstract
Hierarchical multi-label prediction of gene function , Barutcuoglu, Z.; Schapire, R.E.; Troyanskaya, O.G. , Bioinformatics, (2006) Abstract
Modeling Complex Genetic Interactions in a Simple Eukaryotic Genome: Actin Displays a Rich Spectrum of Complex Haploinsufficiencies., Haarer, B.; Viggiano, S.; Hibbs, M.A.; Troyanskaya, O.G.; Amberg, D.C. , Genes & Development, (2006) Abstract
Remote Visualization of Genomics Applications over Wide Area Networks., Bongo, L.A.; Wallace, G.; Larsen, T.; Li, K.; Troyanskaya, O.G. , Proceedings of the International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology (GCCB), (2006) Abstract
2005
Discovery of biological networks from diverse functional genomic data, Myers, C.L.; Robson, D.; Wible, A.; Hibbs, M.A.; Chiriac, C.; Theesfeld, C.L.; Dolinski, K.; Troyanskaya, O.G. , Genome Biology, (2005) Abstract
Dynamic Scalable Visualization for Collaborative Scientific Applications, Li, K.; Hibbs, M.A.; Wallace, G.; Troyanskaya, O.G. , IPDPS 2005 Workshop on Next Generation Software Proceedings, (2005) Abstract
Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, Dolinski, K.; Troyanskaya, O.G. , Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, (2005) Abstract
Putting the 'bio' into bioinformatics, Troyanskaya, O.G. , Genome Biology, (2005) Abstract
Putting microarrays in a context: integrated analysis of diverse biological data, Troyanskaya, O.G. , Briefings in Bioinformatics, (2005) Abstract
Tools and Applications for Large Scale Display Walls., Wallace, G.; Anshus, O.J.; Bi, P.; Chen, H.; Chen, Y.; Clark, D.; Cook, P.; Finkelstein, A.; Funkhouser, T.; Gupta, A.; Hibbs, M.A.; Li, K.; Liu, Z.; Samanta, R.; Sukthankar, R.; Troyanskaya, O.G. , IEEE Computer Graphics and Applications, (2005) Abstract
Unsupervised machine learning to support functional characterization of genes, Troyanskaya, O.G. , Data analysis and visualization methods in genomics and proteomics, (2005) Abstract
Using hierarchies to improve classifier predictions in genomics, Barutcuoglu, Z.; Shapire, R.E.; Troyanskaya, O.G. , NIPS Workshop on Computational Biology and the Analysis of Heterogeneous Data, (2005) Abstract
Visualization-based discovery and analysis of genomic aberrations in microarray data., Myers, C.L.; Chen, X.; Troyanskaya, O.G. , BMC Bioinformatics, (2005) Abstract
Visualization methods for statistical analysis of microarray clusters, Hibbs, M.A.; Dirksen, N.C.; Li, K.; Troyanskaya, O.G. , BMC Bioinformatics, (2005) Abstract
2004
Accurate detection of aneuploidies in array CGH and gene expression microarray data, Myers, C.L.; Dunham, M.; Kung, S.Y.; Troyanskaya, O.G. , Bioinformatics, (2004) Abstract
2003
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in S. cerevisiae), Troyanskaya, O.G.; Dolinski, K.; Owen, A.; Altman, R.; Botstein, D. , PNAS, (2003) Abstract
Endothelial cell diversity revealed by global expression profiling, Chi, J.; Chang, H.; Haraldsen, G.; Jahnsen, F.; Troyanskaya, O.G.; Chang, D.; Wang, Z.; Rockson, S.; van de Rijn, M.; Botstein, D.; Brown, P. , PNAS, (2003) Abstract
Systemic and cell type-specific gene expression patterns in scleroderma skin, Whitfield, M.; Finlay, D.; Troyanskaya, O.; Chi, J.; Pergamenschikov, A.; McCalmont, T.; Brown, P.; Botstein, D.; Connolly, M. , PNAS, (2003) Abstract
Variation in gene expression patterns in human gastric cancers, Chen, X.; Leung, S.; Yuen, S.; Chu, K.; Ji, J.; Li, R.; Chan, S.; Law, S.; Troyanskaya, O.G.; Wong, J.; Botstein, D.; So, S.; Brown, P. , Molecular Biology of the Cell, (2003) Abstract
Variation in gene expression patterns in follicular lymphoma and the response to rituximab, Bohen, S.; Troyanskaya, OlgaG.; Alter, O.; Warnke, R.; Botstein, D.; Brown, P.; Levy, R. , PNAS, (2003) Abstract
12next ›last »